9700_s12_qp_42
A paper of Biology, 9700
Questions:
10
Year:
2012
Paper:
4
Variant:
2

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For Examiner’s Use The bacterium, Treponema pallidum, causes the sexually-transmitted infectious disease, syphilis. If left untreated, the disease can be fatal, but early diagnosis can lead to successful treatment. One of the difficulties of diagnosing this disease in its early stages is the problem of recognising T. pallidum among the other species belonging to the genus Treponema that live in humans. These other treponemes are harmless. A mouse was injected with some cells of T. pallidum. Outline the steps that would then be necessary to produce a clone of hybridoma cells secreting an antibody against this bacterium. A monoclonal antibody, H9-1, has been developed that is specific to a surface protein on T. pallidum, but which is not present on four other species of treponemes found in humans. Each molecule of H9-1 carries a fluorescent yellow marker. One of the first visible signs of syphilis is a painless sore. Suggest how H9-1 is used in the diagnosis of syphilis, using a sample taken from a sore and placed on a microscope slide. For Examiner’s Use Before the development of H9-1, two tests for the presence of T. pallidum were commonly used: • dark-field microscopy (in which treponemes could be seen moving against a dark background) • testing for the presence of anti-treponemal antibodies in the blood plasma. Suggest why, in the early stages of an infection, the presence of T. pallidum might not be detected by either of these tests. The accuracy of the diagnosis of infection by T. pallidum using H9-1 was compared with that using dark-field microscopy and with blood testing. The results are shown in Table 2.1. A positive test result indicated that T. pallidum is present and a negative test result that it is absent. Table 2.1 test test results of 30 people later confirmed to have the infection test results of 31 people later confirmed not to have the infection H9-1 all positive all negative dark-field microscopy one negative two positive blood test three negative two positive For Examiner’s Use With reference to Table 2.1: compare the accuracy of diagnosis of the presence of T. pallidum using the different tests suggest why blood testing for anti-treponemal antibodies gave two positive results in patients later found not to have the infection. Describe briefly one use of a monoclonal antibody in the treatment of disease.
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For Examiner’s Use In order to sequence the DNA of a gene, it is first denatured to separate its two strands. Then, in the presence of a large supply of each of the four nucleotides, the single-stranded DNA is replicated by DNA polymerase. Explain what determines the sequence of nucleotides in the newly replicated strand of DNA. A low concentration of specially prepared nucleotides is also present. Once added to the chain, these nucleotides do not allow the chain to continue growing. Each special nucleotide is labelled with a fluorescent dye, using a different colour for each of the four bases. shows a replicated DNA chain ending with one of the special nucleotides. _ _ _ _ _ G _ _ _ _ G _ _ _ G _ _ _ C _ _ _ C _ _ _ special fluorescent nucleotide with C base not included here in this replication original strand of DNA new DNA strand direction of replication blue fluorescent dye With reference to and to the information given, suggest why a special nucleotide with a C base was not included by DNA polymerase at the first site requiring a C nucleotide. For Examiner’s Use This method of sequencing a gene produces as many DNA fragments as there are nucleotides in the gene, each fragment differing in length by one nucleotide. shows part of a set of such fragments. A_ T_ _ C_ _ _ G_ _ _ _ A_ _ _ _ _ T_ _ _ _ _ _ These fragments are loaded onto a sequencing gel, shown in , and separated by electrophoresis. DNA fragments shown in loaded here –ve +ve detector light source tube gel In what order will the fragments shown in reach the light source and detector shown in ? Explain how gel electrophoresis separates these fragments of DNA.
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For Examiner’s Use Golden Rice™ is a genetically modified form of rice that produces relatively large amounts of β carotene in the endosperm. β carotene is metabolised in the human body to produce vitamin A. Explain why rice has been genetically modified to produce extra β carotene. The first types of Golden Rice™ produced only a very low mass of β carotene per gram of rice. Research continued to try to increase this. shows the metabolic pathway by which β carotene is synthesised in plants, and the enzymes that catalyse each step of the pathway. GGDP phytoene Ȣ carotene lycopene ȕ carotene phytoene synthase phytoene desaturase Ȣ carotene desaturase lycopene ȕ cyclase For Examiner’s Use The first types of Golden Rice™ contained a phytoene synthase gene, psy, from daffodils and a gene crtl, which produced the two desaturase enzymes, from the bacterium Erwinia uredovora. Measurements of the quantities of intermediates in this metabolic pathway in rice endosperm showed that there was always a large amount of GGDP present, and that no phytoene accumulated in the tissues. Explain how this suggests it was not the enzymes produced by the crtl gene that were limiting the production of β carotene. Investigations were carried out to see if psy genes taken from species other than daffodils would enable rice endosperm to produce greater quantities of β carotene than the first types of Golden Rice™. • Psy genes were isolated from the DNA of maize, tomatoes, peppers and daffodils. The genes were inserted into different plasmids. • The promoter Ubi1, and crtl genes from E. uredovora, were also inserted into all of the plasmids. • The four types of genetically modified plasmids were then inserted into different cultures of rice cells. • The quantity of β carotene produced by these rice cells was measured. The results are shown in Table 4.1. Table 4.1 source of psy gene total β carotene content of rice cells / arbitrary units maize pepper tomato daffodil Name the type of enzyme that would have been used to cut the psy gene out of the DNA of the plant cells. For Examiner’s Use Explain why a promoter was inserted into the plasmids. Explain whether or not these results support the hypothesis that the psy gene, not the crtl gene, was limiting the production of β carotene in genetically modified rice. The original choice of a psy gene from daffodils was made because daffodils produce large amounts of β carotene in their yellow petals, and because they are monocotyledonous plants, like rice. Suggest explanations for the much lower production of β carotene in rice containing the psy gene from daffodils than in rice containing the psy gene from maize. Describe the possible disadvantages of growing Golden Rice™.
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For Examiner’s Use Outline the biological basis of the effect of the contraceptive pill. In Uganda, many children are infected with HIV from their mothers. This is called vertical HIV transmission. Uganda has used two ways of trying to reduce vertical HIV transmission. These methods are • to increase the use of antiretroviral drugs (ARVs) by HIV-infected pregnant women • to reduce, through contraception, the numbers of unwanted pregnancies. Table 5.1 shows the percentage reductions in the number of children born with HIV infections and the number of pregnancies in HIV-infected women, that were brought about as a result of the use of ARVs and contraception in 2007. Table 5.1 also shows the predicted reductions in 2012 if usage of ARVs and contraception increase as expected. Table 5.1 percentage reduction caused by use of ARVs by contraception in 2007 predicted in in 2007 predicted in pregnancies in HIV-infected women 21.7 34.0 births of HIV- infected children 8.1 18.1 21.6 32.9 For Examiner’s Use It is estimated that if no ARVs had been used in 2007, 27 000 children would have been born with HIV infection. Calculate the actual number of children born with HIV infection in 2007. Show your working. answer With reference to Table 5.1, explain the difference between the effects of ARVs and contraception on the numbers of pregnancies in HIV-infected women. There is only a limited amount of money to spend on HIV prevention in Uganda. With reference to Table 5.1, suggest arguments for spending at least as much money on increasing access to contraception as on providing ARVs to HIV-infected pregnant women.
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For Examiner’s Use shows a diagram of a stoma, its guard cells and adjacent epidermal cells. stoma epidermal cell guard cells nucleus cytoplasm nucleus Guard cells have chloroplasts while epidermal cells do not have chloroplasts. State one other difference, visible in , between guard cells and epidermal cells. During stomatal closure: state precisely where abscisic acid (ABA) binds identify the ion that diffuses from the guard cells to epidermal cells compare the relative water potential of the guard cells with that of epidermal cells describe the change in volume of the guard cells. For Examiner’s Use The following experiment was carried out to investigate the effect of light intensity on the rate of photosynthesis of a water plant, Elodea. • Elodea was cut into three pieces, each 10 cm long. • Each piece of Elodea was placed in a glass tube, containing 0.5% sodium hydrogencarbonate solution, which was then sealed with a bung. • Tube A was placed 10 cm away from a lamp. • Tube B was placed 5 cm away from a lamp. • Tube C was placed in a dark room. • An oxygen sensor was used to measure the percentage of oxygen in the solutions at the start of the experiment and again at 5, 10 and 20 minutes. The results are shown in . time / minutes percentage of oxygen in solution A B C For Examiner’s Use State why sodium hydrogencarbonate solution was used. Calculate the mean rate of oxygen production for tube A for the 20 minutes of the experiment. Show your working. answer Compare the results for tubes A and B. Explain the results for tube C. Suggest what factor, which may have an effect on the rate of photosynthesis, was not taken into account in this experiment. For Examiner’s Use shows the relationship between the light-dependent and light-independent reactions in a chloroplast. Calvin cycle light-dependent reactions X H2O CO2 O2 sugar Y Name the substances X and Y in . X Y